272
Anthology of Human Repetitive DNA
Tab. 4
(
continued
)
Family name
Names in repbase update
Alternative
names
a
Coding status
tRNA
b
Internal portion
LTR
HERVH48
HERVH48I
MER48
HERV-Fb
Gag, PR, RT, RH,
IN, Env
F
HERVFH21
HERVFH21I
LTR21A, LTR21B
HERV-XA34,
Gag, PR, RT, RH,
F
HERV-F(XA34)
IN, Env
HERV46
HERV46I
LTR46
Gag, PR, RT, RH,
IN, Env
F
PABL
AP
A
B
L
AI
PABL
A
HERV-Rb
Nonautonomous
R/L
PABL
BP
A
B
L
BI
PABL
B
Gag, PR, RT, RH,
IN, Env
R/L
LOR1
LOR1
IL
O
R
1
N
o
n
a
u
t
o
n
o
m
o
u
s
E
MER51
MER51I
MER51A-E
Nonautonomous
E
MER4
MER110
MER110I
MER110,
MER110A
??
HERV23
HERV23I
LTR23
Nonautonomous
?
HERV30
HERV30I
LTR30
Gag, PR, RT, RH,
IN, Env
R/L
MER34B
MER34B
I
MER34B
Nonautonomous
?
HERV35
HERV35I
LTR35
Nonautonomous
?
HERV38
HERV38I
LTR38, LTR38B-C
Nonautonomous
M
HERV39
HERV39
LTR39
Nonautonomous
R
HERV43
HERV43I
LTR43
Nonautonomous
(Env only)
H
HERV45
HERV45I
LTR45, LTR45,
LTR45B-C
? PR, RT, RH, IN
?
HERV49
HERV49I
LTR49
Nonautonomous
?
HERV70
HERV70
I
LTR70
Nonautonomous
?
PRIMA4
PRIMA4
IP
R
I
M
A
4
LTR
Gag, PR, RT, RH,
IN, Env
R/W
MER4I
MER4I
MER4
Nonautonomous
R/W
MER4BI
MER4BI
MER4B
Nonautonomous
(
+
remnants of
class III-derived
gag and pol)
R/F
MER41
MER41I
MER41A-B, D-G
Nonautonomous
R/W
PRIMA41
PRIMA41
MER41C
Gag, PR, RT, RH,
IN, Env
R/W?
MER57
MER57I
MER57A, MER57B
HERV-HS49C23
Nonautonomous
S
Notes
: Internal sequences are not reconstructed yet for LTR24, LTR24B, LTR24C, LTR26, LTR26E,
LTR27, LTR27B, LTR28, LTR29, LTR31, LTR34, LTR36, LTR37A-B, LTR44, LTR48, LTR48B, LTR51,
LTR54, LTR54B, LTR56, LTR58, LTR59, LTR60, LTR61, LTR65, LTR68, LTR72, LTR72B, LTR73, LTR76,
LTR77, MER4C, MER4D, MER4E, MER72, MER72B, MER90.
a
Names given to partially sequenced retroviruses, and secondary names given to individual
sequences of retroviruses whose consensus sequences were deposited in repbase update
much earlier.
b
tRNAa are designated by the corresponding one-letter amino acid code.
previous page 272 Encyclopedia of Molecular Cell Biology and Molecular Medicine read online next page 274 Encyclopedia of Molecular Cell Biology and Molecular Medicine read online Home Toggle text on/off